HL_6GAZ_001

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUGGUCCUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAZ_001 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1149

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6GAZ|1|AA|U|8
6GAZ|1|AA|U|9
6GAZ|1|AA|U|10
6GAZ|1|AA|G|11
6GAZ|1|AA|G|12
6GAZ|1|AA|U|13
6GAZ|1|AA|C|14
6GAZ|1|AA|C|15
6GAZ|1|AA|U|16
6GAZ|1|AA|G|17
6GAZ|1|AA|G|18

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AE

Mitochondrial ribosomal protein S5

Chain AX

MT-CO3 mRNA, mitochondrial