HL_6GAZ_008

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAZ_008 not in the Motif Atlas

Geometric match to HL_1G1X_003

Geometric discrepancy: 0.263

The information below is about HL_1G1X_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6GAZ|1|AA|C|248
6GAZ|1|AA|C|249
6GAZ|1|AA|A|250
6GAZ|1|AA|C|251
6GAZ|1|AA|C|252
6GAZ|1|AA|G|253

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain Ap

28S ribosomal protein S18b, mitochondrial