HL_6GAZ_010

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAZ_010 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.1222

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6GAZ|1|AA|C|376
6GAZ|1|AA|G|377
6GAZ|1|AA|A|378
6GAZ|1|AA|A|379
6GAZ|1|AA|A|380
6GAZ|1|AA|G|381

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AO

Mitochondrial ribosomal protein S15

Chain AU

Mitochondrial ribosomal protein S21

Chain Am

Mitochondrial ribosomal protein S37