HL_6GAZ_014
3D structure
- PDB id
- 6GAZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUAAACCCC
- Length
- 10 nucleotides
- Bulged bases
- 6GAZ|1|AA|C|576
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GAZ_014 not in the Motif Atlas
- Homologous match to HL_5J7L_021
- Geometric discrepancy: 0.341
- The information below is about HL_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6GAZ|1|AA|G|568
6GAZ|1|AA|A|569
6GAZ|1|AA|U|570
6GAZ|1|AA|A|571
6GAZ|1|AA|A|572
6GAZ|1|AA|A|573
6GAZ|1|AA|C|574
6GAZ|1|AA|C|575
6GAZ|1|AA|C|576
6GAZ|1|AA|C|577
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AI
- Mitochondrial ribosomal protein S9
- Chain AJ
- Mitochondrial ribosomal protein S10
- Chain AV
- P-site fMet-tRNAMet, mitochondrial
- Chain BC
- Translation initiation factor IF-2, mitochondrial
Coloring options: