HL_6GAZ_020

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGAAACU

Length

8 nucleotides

Bulged bases

6GAZ|1|AA|C|766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAZ_020 not in the Motif Atlas

Geometric match to HL_5DH6_002

Geometric discrepancy: 0.1562

The information below is about HL_5DH6_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6GAZ|1|AA|A|760
6GAZ|1|AA|U|761
6GAZ|1|AA|G|762
6GAZ|1|AA|A|763
6GAZ|1|AA|A|764
6GAZ|1|AA|A|765
6GAZ|1|AA|C|766
6GAZ|1|AA|U|767

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AN

Mitochondrial ribosomal protein S14

Chain Ai

Mitochondrial ribosomal protein S33