HL_6GAZ_021
3D structure
- PDB id
- 6GAZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAUAGAGUGC
- Length
- 11 nucleotides
- Bulged bases
- 6GAZ|1|AA|U|803, 6GAZ|1|AA|U|808
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GAZ_021 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.3087
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6GAZ|1|AA|G|800
6GAZ|1|AA|A|801
6GAZ|1|AA|A|802
6GAZ|1|AA|U|803
6GAZ|1|AA|A|804
6GAZ|1|AA|G|805
6GAZ|1|AA|A|806
6GAZ|1|AA|G|807
6GAZ|1|AA|U|808
6GAZ|1|AA|G|809
6GAZ|1|AA|C|810
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AI
- Mitochondrial ribosomal protein S9
- Chain AJ
- Mitochondrial ribosomal protein S10
- Chain AN
- Mitochondrial ribosomal protein S14
- Chain Ai
- Mitochondrial ribosomal protein S33
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