HL_6GAZ_027

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAACCUAUA

Length

9 nucleotides

Bulged bases

6GAZ|1|AA|C|884, 6GAZ|1|AA|U|885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GAZ_027 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3161

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6GAZ|1|AA|U|880
6GAZ|1|AA|A|881
6GAZ|1|AA|A|882
6GAZ|1|AA|C|883
6GAZ|1|AA|C|884
6GAZ|1|AA|U|885
6GAZ|1|AA|A|886
6GAZ|1|AA|U|887
6GAZ|1|AA|A|888

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain Ae

Mitochondrial ribosomal protein S27

Chain Aj

Mitochondrial ribosomal protein S34