HL_6GB2_006
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GB2_006 not in the Motif Atlas
- Homologous match to HL_4WF9_015
- Geometric discrepancy: 0.0796
- The information below is about HL_4WF9_015
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 428
Unit IDs
6GB2|1|BA|C|121
6GB2|1|BA|G|122
6GB2|1|BA|U|123
6GB2|1|BA|A|124
6GB2|1|BA|A|125
6GB2|1|BA|G|126
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain B7
- Mitochondrial ribosomal protein L34
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BX
- Mitochondrial ribosomal protein L23
- Chain Be
- Mitochondrial ribosomal protein L41
- Chain Bi
- Mitochondrial ribosomal protein L45
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