RNA 3D Hub //

6GB2 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6GB2_0021/AV/28:36tRNA anticodon loop
geometric
HL_4TUE_034
NA
HL_6GB2_0041/BA/54:61No text annotation
geometric
HL_4WF9_006
HL_48677.1
HL_6GB2_0051/BA/80:86No text annotation
geometric
HL_7A0S_008
HL_76371.2
HL_6GB2_0061/BA/121:126GNRA
homologous
HL_4WF9_015
HL_34789.4
HL_6GB2_0071/BA/167:175No text annotation
homologous
HL_7RQB_017
NA
HL_6GB2_0081/BA/183:192T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
NA
HL_6GB2_0091/BA/220:225No text annotation
geometric
HL_7RQB_011
NA
HL_6GB2_0471/BA/270:277No text annotation
geometric
HL_3FOZ_005
HL_37569.3
HL_6GB2_0111/BA/291:300No text annotation
homologous
HL_7RQB_023
NA
HL_6GB2_0121/BA/326:332No text annotation
homologous
HL_7RQB_024
NA
HL_6GB2_0131/BA/372:377No text annotation
homologous
HL_4WF9_025
HL_27530.1
HL_6GB2_0141/BA/401:410Externally structured
geometric
HL_8C3A_022
NA
HL_6GB2_0151/BA/442:449GNRA
homologous
HL_4WF9_027
HL_34789.4
HL_6GB2_0161/BA/462:469No text annotation
homologous
HL_5J7L_160
NA
HL_6GB2_0171/BA/509:519No text annotation
homologous
HL_5J7L_161
NA
HL_6GB2_0181/BA/536:543GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_98423.3
HL_6GB2_0191/BA/613:620No text annotation
geometric
HL_5E6M_002
HL_10874.1
HL_6GB2_0201/BA/654:657Mini UNCG
geometric
HL_5F9R_002
NA
HL_6GB2_0211/BA/688:693No text annotation
geometric
HL_5TBW_044
NA
HL_6GB2_0221/BA/731:734No text annotation
geometric
HL_7RQB_039
NA
HL_6GB2_0231/BA/760:767No text annotation
homologous
HL_7RQB_040
NA
HL_6GB2_0241/BA/829:839No text annotation
homologous
HL_7RQB_045
NA
HL_6GB2_0251/BA/850:864No text annotation
HL_6GB2_0261/BA/887:892No text annotation
geometric
HL_5U3G_001
HL_75660.8
HL_6GB2_0271/BA/906:915No text annotation
homologous
HL_9DFE_046
HL_82185.1
HL_6GB2_0281/BA/944:952No text annotation
homologous
HL_7A0S_048
HL_61418.2
HL_6GB2_0291/BA/1022:1031No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_6GB2_0311/BA/1148:1156No text annotation
homologous
HL_7A0S_052
HL_11974.2
HL_6GB2_0321/BA/1164:1176No text annotation
HL_6GB2_0331/BA/1187:1190No text annotation
geometric
HL_5J7L_176
NA
HL_6GB2_0341/BA/1198:1205GNRA with extra cWW
geometric
HL_4WF9_053
HL_87268.2
HL_6GB2_0351/BA/1238:1243No text annotation
HL_6GB2_0361/BA/1294:1302No text annotation
homologous
HL_5J7L_193
NA
HL_6GB2_0371/BA/1351:1358No text annotation
homologous
HL_7RQB_061
NA
HL_6GB2_0381/BA/1374:1380No text annotation
homologous
HL_4WF9_058
HL_48677.1
HL_6GB2_0391/BA/1417:1422GNRA
homologous
HL_7RQB_063
NA
HL_6GB2_0401/BA/1461:1466GNRA
geometric
HL_2OIU_001
HL_34789.4
HL_6GB2_0411/BA/1489:1495No text annotation
HL_6GB2_0421/BA/1514:1532No text annotation
HL_6GB2_0431/BA/1557:1565No text annotation
geometric
HL_7A0S_067
HL_37889.1
HL_6GB2_0451/BB/32:40tRNA anticodon loop
homologous
HL_6UFG_007
HL_81376.3

Problematic loops

#loop idProblemSequence
HL_6GB2_001tRNA D-loop
HL_6GB2_003T-loop with 2 bulged bases not stacked
HL_6GB2_010GNRA wlth tandem sheared
HL_6GB2_030No text annotation
HL_6GB2_044tRNA D-loop
HL_6GB2_046No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6GB2_0031/BA/2:4,
1/BA/147:152		No text annotation
IL_6GB2_0041/BA/4:8,
1/BA/132:147		No text annotation
IL_6GB2_0051/BA/12:13,
1/BA/103:105		Single bulged A
homologous
IL_7RQB_002
NA
IL_6GB2_0061/BA/70:73,
1/BA/92:95		Tandem non-canonical cWW pairs
geometric
IL_3R2D_002
IL_71194.2
IL_6GB2_0071/BA/73:79,
1/BA/87:92		7x6 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_251
NA
IL_6GB2_0081/BA/181:183,
1/BA/192:194		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
NA
IL_6GB2_0091/BA/214:216,
1/BA/230:232		Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_01003.4
IL_6GB2_0101/BA/216:219,
1/BA/226:230		No text annotation
IL_6GB2_0111/BA/240:242,
1/BA/353:355		Isolated non-canonical cWW pair
homologous
IL_4WF9_020
IL_01003.4
IL_6GB2_0121/BA/242:246,
1/BA/346:353		tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_6GB2_0131/BA/249:251,
1/BA/341:343		No text annotation
geometric
IL_3LA5_001
NA
IL_6GB2_0141/BA/259:261,
1/BA/316:318		Isolated non-canonical cWW pair
geometric
IL_4WF9_083
IL_01003.4
IL_6GB2_0151/BA/265:266,
1/BA/310:312		Single bulged A
homologous
IL_5J7L_261
NA
IL_6GB2_0161/BA/285:288,
1/BA/303:305		Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_6GB2_0171/BA/322:324,
1/BA/334:338		Multiple bulged bases
homologous
IL_5J7L_265
NA
IL_6GB2_0181/BA/394:400,
1/BA/411:417		No text annotation
geometric
IL_5XWG_002
IL_74768.1
IL_6GB2_0191/BA/478:480,
1/BA/588:589		Single bulged C
homologous
IL_5J7L_276
NA
IL_6GB2_0201/BA/502:504,
1/BA/524:526		Isolated near basepair
geometric
IL_7A0S_030
IL_42997.5
IL_6GB2_0211/BA/504:507,
1/BA/521:524		No text annotation
geometric
IL_5D8H_002
IL_28482.1
IL_6GB2_0221/BA/531:534,
1/BA/545:546		No text annotation
homologous
IL_6PRV_002
NA
IL_6GB2_0231/BA/640:647,
1/BA/1006:1012		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_6GB2_0241/BA/663:666,
1/BA/773:779		No text annotation
IL_6GB2_0251/BA/682:687,
1/BA/694:697		C-loop
homologous
IL_7RQB_051
NA
IL_6GB2_0261/BA/710:713,
1/BA/743:751		No text annotation
IL_6GB2_0271/BA/719:731,
1/BA/734:737		No text annotation
IL_6GB2_0621/BA/787:792,
1/BA/998:1000		No text annotation
IL_6GB2_0291/BA/798:800,
1/BA/990:992		Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_6GB2_0301/BA/801:804,
1/BA/988:989		Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_6GB2_0611/BA/801:809,
1/BA/985:989		No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_6GB2_0311/BA/804:809,
1/BA/985:988		Intercalated tWH
geometric
IL_4WF9_065
IL_28217.1
IL_6GB2_0321/BA/809:817,
1/BA/982:985		No text annotation
IL_6GB2_0331/BA/822:823,
1/BA/975:977		Single bulged A
homologous
IL_7RQB_069
NA
IL_6GB2_0341/BA/880:883,
1/BA/898:899		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_6GB2_0351/BA/884:885,
1/BA/894:897		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_6GB2_0361/BA/928:929,
1/BA/959:962		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_6GB2_0371/BA/929:940,
1/BA/956:959		No text annotation
IL_6GB2_0381/BA/1045:1047,
1/BA/1440:1441		Major groove platform
homologous
IL_5J7L_320
NA
IL_6GB2_0391/BA/1049:1051,
1/BA/1435:1438		No text annotation
homologous
IL_5J7L_321
NA
IL_6GB2_0401/BA/1062:1064,
1/BA/1265:1266		Single bulged U
homologous
IL_7RQB_080
NA
IL_6GB2_0411/BA/1065:1066,
1/BA/1261:1264		Minor groove platform
homologous
IL_7RQB_081
NA
IL_6GB2_0421/BA/1075:1078,
1/BA/1138:1140		No text annotation
geometric
IL_4V9F_053
IL_49140.1
IL_6GB2_0431/BA/1080:1082,
1/BA/1134:1136		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_6GB2_0441/BA/1085:1087,
1/BA/1126:1131		No text annotation
IL_6GB2_0451/BA/1192:1196,
1/BA/1207:1211		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
NA
IL_6GB2_0461/BA/1276:1277,
1/BA/1321:1323		Single stack bend
homologous
IL_4WF9_089
IL_15011.3
IL_6GB2_0471/BA/1277:1278,
1/BA/1319:1321		Major groove platform
geometric
IL_4V9F_082
IL_48076.8
IL_6GB2_0481/BA/1279:1282,
1/BA/1316:1318		Major groove platform with extra pair
homologous
IL_7RQB_093
NA
IL_6GB2_0491/BA/1282:1284,
1/BA/1312:1316		Major groove minor groove platform with extra cWW
geometric
IL_4WF9_092
IL_36931.2
IL_6GB2_0501/BA/1289:1293,
1/BA/1303:1307		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_6GB2_0511/BA/1330:1331,
1/BA/1403:1405		Major groove platform
homologous
IL_7RQB_096
NA
IL_6GB2_0521/BA/1333:1335,
1/BA/1397:1401		Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA
IL_6GB2_0531/BA/1335:1336,
1/BA/1394:1397		No text annotation
homologous
IL_5J7L_341
NA
IL_6GB2_0541/BA/1344:1346,
1/BA/1363:1367		No text annotation
IL_6GB2_0551/BA/1414:1415,
1/BA/1424:1426		Single bulged A
homologous
IL_5J7L_344
NA
IL_6GB2_0561/BA/1454:1461,
1/BA/1466:1472		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_6GB2_0571/BA/1483:1487,
1/BA/1497:1499		C-loop
geometric
IL_7RQB_051
NA
IL_6GB2_0581/BA/1487:1489,
1/BA/1495:1497		Isolated non-canonical cWW pair
geometric
IL_6IA2_005
IL_01003.4
IL_6GB2_0591/BA/1507:1512,
1/BA/1534:1539		No text annotation
geometric
IL_4QLM_002
IL_74322.2

Problematic loops

#loop idProblemSequence
IL_6GB2_001Isolated non-canonical cWW pair
IL_6GB2_002Tandem non-canonical cWW pairs
IL_6GB2_028No text annotation
IL_6GB2_060No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6GB2_0071/BA/8:11,
1/BA/106:120,
1/BA/127:132		No text annotation
J3_6GB2_0081/BA/14:54,
1/BA/61:70,
1/BA/95:102		No text annotation
J3_6GB2_0011/BA/251:257,
1/BA/320:322,
1/BA/338:341		No text annotation
homologous
J3_5J7L_038
NA
J3_6GB2_0021/BA/266:268,
1/BA/279:283,
1/BA/307:310		No text annotation
homologous
J3_7RQB_005
NA
J3_6GB2_0091/BA/482:502,
1/BA/526:531,
1/BA/546:586		No text annotation
J3_6GB2_0031/BA/669:676,
1/BA/755:759,
1/BA/768:770		No text annotation
J3_6GB2_0041/BA/676:678,
1/BA/701:708,
1/BA/753:755		No text annotation
J3_6GB2_0101/BA/1182:1183,
1/BA/1225:1236,
1/BA/1245:1251		No text annotation
J3_6GB2_0051/BA/1186:1187,
1/BA/1190:1191,
1/BA/1212:1222		No text annotation
J3_6GB2_0061/BA/1340:1343,
1/BA/1368:1370,
1/BA/1384:1390		No text annotation
homologous
J3_7RQB_012
NA
J4_6GB2_0021/BA/648:651,
1/BA/660:661,
1/BA/781:784,
1/BA/1003:1005		No text annotation
J4_6GB2_0031/BA/669:678,
1/BA/701:708,
1/BA/753:759,
1/BA/768:770		No text annotation
J4_6GB2_0041/BA/824:828,
1/BA/840:845,
1/BA/869:874,
1/BA/969:974		No text annotation
J4_6GB2_0051/BA/876:878,
1/BA/901:902,
1/BA/919:928,
1/BA/962:967		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_6GB2_0061/BA/1446:1448,
1/BA/1478:1479,
1/BA/1503:1505,
1/BA/1541:1543		No text annotation
J4_6GB2_0071/BB/7:10,
1/BB/26:28,
1/BB/44:49,
1/BB/62:63		tRNA junction
homologous
J4_5HR7_002
J4_95067.1
J5_6GB2_0011/BA/201:210,
1/BA/236:239,
1/BA/356:359,
1/BA/605:609,
1/BA/624:634		No text annotation
J5_6GB2_0021/BA/1052:1059,
1/BA/1269:1276,
1/BA/1323:1330,
1/BA/1405:1411,
1/BA/1429:1434		No text annotation
J5_6GB2_0031/BA/1069:1072,
1/BA/1143:1146,
1/BA/1158:1159,
1/BA/1181:1182,
1/BA/1251:1258		No text annotation
homologous
J5_7A0S_007
J5_39529.2
J6_6GB2_0011/BA/363:369,
1/BA/380:384,
1/BA/427:434,
1/BA/457:461,
1/BA/470:475,
1/BA/592:601		No text annotation
J6_6GB2_0021/BA/1069:1072,
1/BA/1143:1146,
1/BA/1158:1159,
1/BA/1181:1183,
1/BA/1225:1236,
1/BA/1245:1258		No text annotation

Problematic loops

#loop idProblemSequence
J4_6GB2_001No text annotation

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