HL_6GB2_010

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAAAAGAA

Length

10 nucleotides

Bulged bases

6GB2|1|BA|A|274, 6GB2|1|BA|G|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GB2_010 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.3699

The information below is about HL_5J7L_154

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6GB2|1|BA|U|269
6GB2|1|BA|U|270
6GB2|1|BA|U|271
6GB2|1|BA|A|272
6GB2|1|BA|A|273
6GB2|1|BA|A|274
6GB2|1|BA|A|275
6GB2|1|BA|G|276
6GB2|1|BA|A|277
6GB2|1|BA|A|278

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BD

Mitochondrial ribosomal protein L2

Chain Ba

Mitochondrial ribosomal protein L37