HL_6GB2_012

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

6GB2|1|BA|A|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GB2_012 not in the Motif Atlas

Homologous match to HL_7RQB_024

Geometric discrepancy: 0.216

The information below is about HL_7RQB_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74322.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

4

Unit IDs

6GB2|1|BA|U|326
6GB2|1|BA|G|327
6GB2|1|BA|A|328
6GB2|1|BA|A|329
6GB2|1|BA|A|330
6GB2|1|BA|A|331
6GB2|1|BA|G|332

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BD

Mitochondrial ribosomal protein L2

Chain Bi

Mitochondrial ribosomal protein L45