HL_6GB2_013

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUUAG

Length

6 nucleotides

Bulged bases

6GB2|1|BA|U|373, 6GB2|1|BA|A|376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GB2_013 not in the Motif Atlas

Homologous match to HL_4WF9_025

Geometric discrepancy: 0.1455

The information below is about HL_4WF9_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.2

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

6GB2|1|BA|U|372
6GB2|1|BA|U|373
6GB2|1|BA|U|374
6GB2|1|BA|U|375
6GB2|1|BA|A|376
6GB2|1|BA|G|377

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BP

Mitochondrial ribosomal protein L15