HL_6GB2_017

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

6GB2|1|BA|A|515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GB2_017 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.2458

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GB2|1|BA|C|509
6GB2|1|BA|C|510
6GB2|1|BA|U|511
6GB2|1|BA|A|512
6GB2|1|BA|A|513
6GB2|1|BA|A|514
6GB2|1|BA|A|515
6GB2|1|BA|G|516
6GB2|1|BA|C|517
6GB2|1|BA|A|518
6GB2|1|BA|G|519

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BK

Mitochondrial ribosomal protein L11

Chain BQ

Mitochondrial ribosomal protein L16