HL_6GB2_031
3D structure
- PDB id
- 6GB2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGGGGUGA
- Length
- 9 nucleotides
- Bulged bases
- 6GB2|1|BA|G|1150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GB2_031 not in the Motif Atlas
- Homologous match to HL_7A0S_052
- Geometric discrepancy: 0.1048
- The information below is about HL_7A0S_052
- Detailed Annotation
- LSU P loop
- Broad Annotation
- LSU P loop
- Motif group
- HL_11974.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
6GB2|1|BA|U|1148
6GB2|1|BA|U|1149
6GB2|1|BA|G|1150
6GB2|1|BA|G|1151
6GB2|1|BA|G|1152
6GB2|1|BA|G|1153
6GB2|1|BA|U|1154
6GB2|1|BA|G|1155
6GB2|1|BA|A|1156
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain AV
- P-site fMet-tRNAMet, mitochondrial
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain BC
- Translation initiation factor IF-2, mitochondrial
- Chain BQ
- Mitochondrial ribosomal protein L16
Coloring options: