HL_6GB2_039

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GB2_039 not in the Motif Atlas

Homologous match to HL_7RQB_063

Geometric discrepancy: 0.118

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6GB2|1|BA|A|1417
6GB2|1|BA|G|1418
6GB2|1|BA|C|1419
6GB2|1|BA|A|1420
6GB2|1|BA|A|1421
6GB2|1|BA|U|1422

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain AV

P-site fMet-tRNAMet, mitochondrial

Chain BD

Mitochondrial ribosomal protein L2