HL_6GB2_042

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUGAUUUAAUCUUAACCU

Length

19 nucleotides

Bulged bases

6GB2|1|BA|U|1521, 6GB2|1|BA|U|1527

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GB2|1|BA|A|1514
6GB2|1|BA|A|1515
6GB2|1|BA|U|1516
6GB2|1|BA|G|1517
6GB2|1|BA|A|1518
6GB2|1|BA|U|1519
6GB2|1|BA|U|1520
6GB2|1|BA|U|1521
6GB2|1|BA|A|1522
6GB2|1|BA|A|1523
6GB2|1|BA|U|1524
6GB2|1|BA|C|1525
6GB2|1|BA|U|1526
6GB2|1|BA|U|1527
6GB2|1|BA|A|1528
6GB2|1|BA|A|1529
6GB2|1|BA|C|1530
6GB2|1|BA|C|1531
6GB2|1|BA|U|1532

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B9

Ribosomal protein

Chain BN

Mitochondrial ribosomal protein L13

Chain Bp

mL53, MRPL53

Chain Bx

Mitochondrial ribosomal protein S18A