HL_6GB2_043

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAGAACAG

Length

9 nucleotides

Bulged bases

6GB2|1|BA|U|1558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GB2_043 not in the Motif Atlas

Geometric match to HL_7A0S_067

Geometric discrepancy: 0.1268

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.2

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6GB2|1|BA|C|1557
6GB2|1|BA|U|1558
6GB2|1|BA|A|1559
6GB2|1|BA|G|1560
6GB2|1|BA|A|1561
6GB2|1|BA|A|1562
6GB2|1|BA|C|1563
6GB2|1|BA|A|1564
6GB2|1|BA|G|1565

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B5

Mitochondrial ribosomal protein L32

Chain BE

ICT1

Chain BR

Mitochondrial ribosomal protein L17

Chain BT

Mitochondrial ribosomal protein L19