HL_6GBZ_012

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

6GBZ|1|A|G|386, 6GBZ|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GBZ_012 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.2265

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6GBZ|1|A|G|381
6GBZ|1|A|A|382
6GBZ|1|A|C|383
6GBZ|1|A|A|384
6GBZ|1|A|C|385
6GBZ|1|A|G|386
6GBZ|1|A|U|387
6GBZ|1|A|G|388
6GBZ|1|A|G|389
6GBZ|1|A|U|390
6GBZ|1|A|A|391
6GBZ|1|A|U|392
6GBZ|1|A|C|393

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28