HL_6GBZ_049

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6GBZ|1|A|U|1951, 6GBZ|1|A|U|1955

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GBZ_049 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1707

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6GBZ|1|A|G|1949
6GBZ|1|A|G|1950
6GBZ|1|A|U|1951
6GBZ|1|A|A|1952
6GBZ|1|A|A|1953
6GBZ|1|A|G|1954
6GBZ|1|A|U|1955
6GBZ|1|A|U|1956
6GBZ|1|A|C|1957

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27