HL_6GC0_004

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

6GC0|1|A|U|138, 6GC0|1|A|U|139, 6GC0|1|A|G|141

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC0_004 not in the Motif Atlas

Homologous match to HL_5J7L_137

Geometric discrepancy: 0.3106

The information below is about HL_5J7L_137

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32392.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6GC0|1|A|U|137
6GC0|1|A|U|138
6GC0|1|A|U|139
6GC0|1|A|C|140
6GC0|1|A|G|141
6GC0|1|A|A|142

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23