6GC0 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6GC0_001 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.2 | |
| HL_6GC0_002 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 HL_77600.1 | |
| HL_6GC0_003 | 1/A/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.3 | |
| HL_6GC0_004 | 1/A/137:142 | No text annotation | homologous HL_5J7L_137 HL_13877.1 | |
| HL_6GC0_067 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_6GC0_006 | 1/A/188:208 | No text annotation | ||
| HL_6GC0_007 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_6GC0_008 | 1/A/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.1 | |
| HL_6GC0_009 | 1/A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.2 | |
| HL_6GC0_010 | 1/A/319:323 | No text annotation | homologous HL_4WF9_011 HL_75660.3 | |
| HL_6GC0_011 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.1 | |
| HL_6GC0_079 | 1/A/382:392 | No text annotation | ||
| HL_6GC0_013 | 1/A/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.2 | |
| HL_6GC0_014 | 1/A/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.5 | |
| HL_6GC0_015 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.5 | |
| HL_6GC0_016 | 1/A/543:550 | No text annotation | homologous HL_5J7L_149 HL_09452.1 | |
| HL_6GC0_017 | 1/A/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.4 | |
| HL_6GC0_018 | 1/A/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_6GC0_019 | 1/A/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.5 | |
| HL_6GC0_068 | 1/A/641:647 | No text annotation | homologous HL_5J7L_153 HL_20554.2 | |
| HL_6GC0_021 | 1/A/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.1 | |
| HL_6GC0_022 | 1/A/744:753 | No text annotation | homologous HL_4WF9_023 HL_88205.1 | |
| HL_6GC0_080 | 1/A/779:785 | No text annotation | ||
| HL_6GC0_024 | 1/A/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_6GC0_070 | 1/A/875:902 | No text annotation | ||
| HL_6GC0_025 | 1/A/885:891 | Mini UNCG | geometric HL_4LFB_005 HL_46878.1 | |
| HL_6GC0_071 | 1/A/955:962 | GNRA | homologous HL_7A0S_026 HL_37824.5 | |
| HL_6GC0_027 | 1/A/978:985 | No text annotation | homologous HL_7A0S_027 HL_42998.1 | |
| HL_6GC0_028 | 1/A/1062:1076 | No text annotation | geometric HL_8C3A_221 HL_48417.3 | |
| HL_6GC0_029 | 1/A/1087:1102 | No text annotation | homologous HL_5J7L_162 NA | |
| HL_6GC0_081 | 1/A/1169:1180 | No text annotation | ||
| HL_6GC0_031 | 1/A/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.5 | |
| HL_6GC0_032 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.4 | |
| HL_6GC0_033 | 1/A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.1 | |
| HL_6GC0_034 | 1/A/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.5 | |
| HL_6GC0_035 | 1/A/1389:1398 | No text annotation | homologous HL_4WF9_035 HL_81545.1 | |
| HL_6GC0_036 | 1/A/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 HL_22622.1 | |
| HL_6GC0_037 | 1/A/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.1 | |
| HL_6GC0_038 | 1/A/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.3 | |
| HL_6GC0_039 | 1/A/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_46878.1 | |
| HL_6GC0_040 | 1/A/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_89567.1 | |
| HL_6GC0_041 | 1/A/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.5 | |
| HL_6GC0_042 | 1/A/1691:1696 | UNCG | geometric HL_4PMI_004 HL_34617.3 | |
| HL_6GC0_073 | 1/A/1727:1733 | No text annotation | homologous HL_5J7L_214 HL_45127.1 | |
| HL_6GC0_043 | 1/A/1728:1731 | No text annotation | ||
| HL_6GC0_044 | 1/A/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.1 | |
| HL_6GC0_082 | 1/A/1777:1787 | No text annotation | ||
| HL_6GC0_046 | 1/A/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_6GC0_074 | 1/A/1864:1878 | No text annotation | ||
| HL_6GC0_047 | 1/A/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.5 | |
| HL_6GC0_048 | 1/A/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_6GC0_049 | 1/A/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_61996.1 | |
| HL_6GC0_050 | 1/A/2143:2148 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_6GC0_051 | 1/A/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.2 | |
| HL_6GC0_052 | 1/A/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.1 | |
| HL_6GC0_053 | 1/A/2264:2276 | No text annotation | homologous HL_4WF9_050 HL_91939.1 | |
| HL_6GC0_054 | 1/A/2303:2313 | No text annotation | homologous HL_7RQB_055 NA | |
| HL_6GC0_055 | 1/A/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.2 | |
| HL_6GC0_056 | 1/A/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.5 | |
| HL_6GC0_057 | 1/A/2374:2379 | GNRA | homologous HL_4WF9_054 HL_37824.5 | |
| HL_6GC0_058 | 1/A/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_6GC0_059 | 1/A/2658:2663 | GNRA | geometric HL_4Y1M_003 HL_37824.5 | |
| HL_6GC0_060 | 1/A/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.4 | |
| HL_6GC0_061 | 1/A/2745:2759 | No text annotation | homologous HL_5J7L_199 HL_74055.1 | |
| HL_6GC0_062 | 1/A/2795:2801 | Other HL | homologous HL_5J7L_200 HL_45127.1 | |
| HL_6GC0_063 | 1/A/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.5 | |
| HL_6GC0_064 | 1/A/2856:2861 | GNRA | homologous HL_7A0S_068 HL_37824.5 | |
| HL_6GC0_078 | 1/B/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_6GC0_065 | 1/B/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.1 | |
| HL_6GC0_066 | 1/B/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_46878.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6GC0_005 | No text annotation | ||
| HL_6GC0_012 | No text annotation | ||
| HL_6GC0_020 | GNRA related | ||
| HL_6GC0_069 | No text annotation | ||
| HL_6GC0_023 | No text annotation | ||
| HL_6GC0_026 | tRNA anticodon loop | ||
| HL_6GC0_030 | No text annotation | ||
| HL_6GC0_072 | No text annotation | ||
| HL_6GC0_045 | No text annotation | ||
| HL_6GC0_075 | No text annotation | ||
| HL_6GC0_076 | No text annotation | ||
| HL_6GC0_077 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6GC0_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 IL_04021.1 | |
| IL_6GC0_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6GC0_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_92540.1 | |
| IL_6GC0_004 | 1/A/81:85, 1/A/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_6GC0_005 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_5J7L_249 IL_06586.2 | |
| IL_6GC0_006 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.1 | |
| IL_6GC0_007 | 1/A/269:271, 1/A/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_6GC0_008 | 1/A/274:281, 1/A/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_6GC0_009 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_6GC0_010 | 1/A/481:484, 1/A/496:509 | No text annotation | homologous IL_5J7L_255 IL_81516.1 | |
| IL_6GC0_011 | 1/A/536:539, 1/A/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.13 | |
| IL_6GC0_012 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 IL_10289.2 | |
| IL_6GC0_013 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_6GC0_014 | 1/A/672:674, 1/A/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 IL_10289.2 | |
| IL_6GC0_015 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 IL_54041.1 | |
| IL_6GC0_016 | 1/A/697:698, 1/A/763:765 | Single bulged A | homologous IL_5J7L_261 IL_31462.3 | |
| IL_6GC0_017 | 1/A/702:703, 1/A/728:730 | Single bulged G | geometric IL_4V9F_026 IL_00225.11 | |
| IL_6GC0_018 | 1/A/703:707, 1/A/724:728 | Triple sheared | homologous IL_4WF9_024 IL_50730.1 | |
| IL_6GC0_019 | 1/A/738:740, 1/A/757:758 | Major groove platform | homologous IL_4WF9_026 IL_48076.4 | |
| IL_6GC0_020 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases | homologous IL_7A0S_021 IL_06549.1 | |
| IL_6GC0_021 | 1/A/837:838, 1/A/940:942 | Single stack bend | homologous IL_5J7L_266 IL_06586.2 | |
| IL_6GC0_022 | 1/A/844:847, 1/A/933:934 | Other IL | geometric IL_5J7L_267 IL_17347.1 | |
| IL_6GC0_103 | 1/A/844:848, 1/A/930:934 | No text annotation | ||
| IL_6GC0_023 | 1/A/847:848, 1/A/930:933 | Stack outside cWW | homologous IL_5J7L_268 IL_56987.1 | |
| IL_6GC0_024 | 1/A/850:851, 1/A/926:928 | Single stack bend | homologous IL_5J7L_269 IL_06586.2 | |
| IL_6GC0_025 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 IL_29198.1 | |
| IL_6GC0_123 | 1/A/856:863, 1/A/913:921 | No text annotation | ||
| IL_6GC0_026 | 1/A/862:863, 1/A/913:915 | Single bulged G | geometric IL_5J7L_271 IL_00225.11 | |
| IL_6GC0_027 | 1/A/864:868, 1/A/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.1 | |
| IL_6GC0_028 | 1/A/870:872, 1/A/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_10289.2 | |
| IL_6GC0_029 | 1/A/875:882, 1/A/894:902 | No text annotation | ||
| IL_6GC0_030 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.14 | |
| IL_6GC0_031 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_38507.1 | |
| IL_6GC0_032 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot | geometric IL_4WF9_037 IL_41203.2 | |
| IL_6GC0_033 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.2 | |
| IL_6GC0_034 | 1/A/1018:1024, 1/A/1140:1144 | No text annotation | homologous IL_7RQB_039 NA | |
| IL_6GC0_035 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_6GC0_036 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6GC0_037 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_54697.2 | |
| IL_6GC0_038 | 1/A/1043:1051, 1/A/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.1 | |
| IL_6GC0_039 | 1/A/1059:1062, 1/A/1076:1079 | No text annotation | homologous IL_5J7L_285 IL_92446.2 | |
| IL_6GC0_040 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.1 | |
| IL_6GC0_041 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6GC0_042 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.7 | |
| IL_6GC0_043 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.9 | |
| IL_6GC0_124 | 1/A/1310:1313, 1/A/1603:1604 | No text annotation | ||
| IL_6GC0_044 | 1/A/1319:1323, 1/A/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.10 | |
| IL_6GC0_045 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN | homologous IL_7A0S_048 IL_89021.2 | |
| IL_6GC0_046 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.5 | |
| IL_6GC0_047 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_6GC0_048 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.1 | |
| IL_6GC0_049 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.1 | |
| IL_6GC0_050 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW | homologous IL_7A0S_053 IL_99646.2 | |
| IL_6GC0_051 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U | geometric IL_5J7L_298 IL_89505.2 | |
| IL_6GC0_052 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_6GC0_053 | 1/A/1474:1479, 1/A/1512:1517 | No text annotation | ||
| IL_6GC0_107 | 1/A/1474:1482, 1/A/1507:1517 | No text annotation | ||
| IL_6GC0_054 | 1/A/1481:1482, 1/A/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_6GC0_055 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.3 | |
| IL_6GC0_056 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_6GC0_057 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.1 | |
| IL_6GC0_058 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_50694.5 | |
| IL_6GC0_108 | 1/A/1666:1674, 1/A/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_22854.3 | |
| IL_6GC0_059 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH | geometric IL_4WF9_065 IL_76758.1 | |
| IL_6GC0_060 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_6GC0_061 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.3 | |
| IL_6GC0_062 | 1/A/1720:1724, 1/A/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.1 | |
| IL_6GC0_063 | 1/A/1727:1728, 1/A/1731:1733 | Single bulged C | homologous IL_5J7L_311 IL_61258.14 | |
| IL_6GC0_064 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A | homologous IL_4WF9_068 IL_31462.3 | |
| IL_6GC0_065 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_6GC0_066 | 1/A/1837:1840, 1/A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_58310.2 | |
| IL_6GC0_067 | 1/A/1841:1842, 1/A/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.2 | |
| IL_6GC0_068 | 1/A/1846:1849, 1/A/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.2 | |
| IL_6GC0_114 | 1/A/1851:1860, 1/A/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_6GC0_069 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.4 | |
| IL_6GC0_070 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.4 | |
| IL_6GC0_071 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation | ||
| IL_6GC0_073 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U | homologous IL_4WF9_080 IL_89505.2 | |
| IL_6GC0_125 | 1/A/2067:2071, 1/A/2438:2443 | No text annotation | ||
| IL_6GC0_074 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6GC0_075 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.1 | |
| IL_6GC0_076 | 1/A/2085:2087, 1/A/2232:2234 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_10289.2 | |
| IL_6GC0_126 | 1/A/2103:2105, 1/A/2184:2186 | No text annotation | ||
| IL_6GC0_078 | 1/A/2106:2110, 1/A/2179:2183 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_6GC0_127 | 1/A/2108:2120, 1/A/2178:2181 | No text annotation | ||
| IL_6GC0_079 | 1/A/2110:2120, 1/A/2178:2179 | Multiple bulged bases | geometric IL_1KXK_003 IL_42626.1 | |
| IL_6GC0_128 | 1/A/2124:2127, 1/A/2161:2174 | No text annotation | ||
| IL_6GC0_129 | 1/A/2129:2136, 1/A/2155:2159 | No text annotation | ||
| IL_6GC0_082 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.2 | |
| IL_6GC0_083 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.13 | |
| IL_6GC0_084 | 1/A/2401:2403, 1/A/2414:2415 | No text annotation | ||
| IL_6GC0_085 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_6GC0_086 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.4 | |
| IL_6GC0_087 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.10 | |
| IL_6GC0_088 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation | homologous IL_4WF9_102 IL_08296.5 | |
| IL_6GC0_089 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.1 | |
| IL_6GC0_090 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_6GC0_091 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_6GC0_092 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.4 | |
| IL_6GC0_093 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW | geometric IL_5J7L_353 IL_64231.3 | |
| IL_6GC0_122 | 1/A/2847:2852, 1/A/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.1 | |
| IL_6GC0_095 | 1/B/17:18, 1/B/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.3 | |
| IL_6GC0_096 | 1/B/23:28, 1/B/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_6GC0_130 | 1/B/30:31, 1/B/51:54 | No text annotation | ||
| IL_6GC0_098 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 IL_58103.10 | |
| IL_6GC0_099 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6GC0_100 | Minor groove platform with extra cWW | ||
| IL_6GC0_101 | No text annotation | ||
| IL_6GC0_102 | No text annotation | ||
| IL_6GC0_104 | No text annotation | ||
| IL_6GC0_105 | No text annotation | ||
| IL_6GC0_106 | tSH-tHW-tHS-cWW | ||
| IL_6GC0_109 | No text annotation | ||
| IL_6GC0_110 | No text annotation | ||
| IL_6GC0_111 | Triple sheared with non-canonical cWW | ||
| IL_6GC0_112 | Isolated non-canonical cWW pair | ||
| IL_6GC0_113 | No text annotation | ||
| IL_6GC0_072 | No text annotation | ||
| IL_6GC0_115 | No text annotation | ||
| IL_6GC0_077 | Tandem non-canonical cWW pairs | ||
| IL_6GC0_116 | No text annotation | ||
| IL_6GC0_080 | Kink-turn related | ||
| IL_6GC0_081 | No text annotation | ||
| IL_6GC0_117 | No text annotation | ||
| IL_6GC0_118 | Triple sheared | ||
| IL_6GC0_119 | C-loop with extra cWW pair | ||
| IL_6GC0_120 | No text annotation | ||
| IL_6GC0_121 | No text annotation | ||
| IL_6GC0_094 | No text annotation | ||
| IL_6GC0_097 | 8-nt loop receptor |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6GC0_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6GC0_014 | 1/A/30:31, 1/A/474:484, 1/A/496:510 | No text annotation | homologous J3_5J7L_066 J3_92134.1 | |
| J3_6GC0_015 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.1 | |
| J3_6GC0_022 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | ||
| J3_6GC0_016 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_6GC0_003 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.1 | |
| J3_6GC0_004 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation | homologous J3_4WF9_003 J3_44724.6 | |
| J3_6GC0_023 | 1/A/1055:1058, 1/A/1080:1087, 1/A/1102:1104 | No text annotation | ||
| J3_6GC0_006 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_6GC0_007 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_6GC0_008 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_6GC0_024 | 1/A/1424:1429, 1/A/1564:1565, 1/A/1568:1574 | No text annotation | ||
| J3_6GC0_009 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_6GC0_010 | 1/A/2295:2299, 1/A/2317:2323, 1/A/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_6GC0_011 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_6GC0_012 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_6GC0_013 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation | homologous J3_5J7L_049 J3_60223.1 | |
| J4_6GC0_010 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | ||
| J4_6GC0_002 | 1/A/297:301, 1/A/316:319, 1/A/323:325, 1/A/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_6GC0_003 | 1/A/601:604, 1/A/624:628, 1/A/635:638, 1/A/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6GC0_004 | 1/A/1270:1276, 1/A/1294:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_6GC0_011 | 1/A/1310:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1604 | No text annotation | ||
| J4_6GC0_012 | 1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603 | No text annotation | ||
| J4_6GC0_013 | 1/A/1444:1445, 1/A/1466:1467, 1/A/1525:1529, 1/A/1542:1547 | No text annotation | ||
| J4_6GC0_007 | 1/A/1772:1776, 1/A/1788:1792, 1/A/1827:1830, 1/A/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_6GC0_014 | 1/A/2285:2289, 1/A/2343:2347, 1/A/2370:2372, 1/A/2381:2383 | No text annotation | ||
| J4_6GC0_009 | 1/A/2643:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_6GC0_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:150, 1/A/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.1 | |
| J5_6GC0_002 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_6GC0_005 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | ||
| J5_6GC0_006 | 1/A/1674:1682, 1/A/1706:1707, 1/A/1751:1752, 1/A/1756:1764, 1/A/1988:1990 | No text annotation | ||
| J6_6GC0_003 | 1/A/45:46, 1/A/179:183, 1/A/214:224, 1/A/231:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J6_6GC0_004 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2284, 1/A/2384:2395, 1/A/2421:2435 | No text annotation | ||
| J7_6GC0_001 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_6GC0_003 | 1/A/817:822, 1/A/835:837, 1/A/942:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6GC0_002 | No text annotation | ||
| J3_6GC0_017 | No text annotation | ||
| J3_6GC0_005 | No text annotation | ||
| J3_6GC0_018 | No text annotation | ||
| J3_6GC0_019 | No text annotation | ||
| J3_6GC0_020 | No text annotation | ||
| J3_6GC0_021 | No text annotation | ||
| J4_6GC0_001 | No text annotation | ||
| J4_6GC0_005 | No text annotation | ||
| J4_6GC0_006 | No text annotation | ||
| J4_6GC0_008 | No text annotation | ||
| J5_6GC0_003 | No text annotation | ||
| J5_6GC0_004 | No text annotation | ||
| J6_6GC0_001 | No text annotation | ||
| J6_6GC0_002 | No text annotation | ||
| J7_6GC0_002 | No text annotation |
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