HL_6GC0_006

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAACUGAAACAUCUAAGUAC

Length

21 nucleotides

Bulged bases

6GC0|1|A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GC0|1|A|G|188
6GC0|1|A|G|189
6GC0|1|A|A|190
6GC0|1|A|A|191
6GC0|1|A|C|192
6GC0|1|A|U|193
6GC0|1|A|G|194
6GC0|1|A|A|195
6GC0|1|A|A|196
6GC0|1|A|A|197
6GC0|1|A|C|198
6GC0|1|A|A|199
6GC0|1|A|U|200
6GC0|1|A|C|201
6GC0|1|A|U|202
6GC0|1|A|A|203
6GC0|1|A|A|204
6GC0|1|A|G|205
6GC0|1|A|U|206
6GC0|1|A|A|207
6GC0|1|A|C|208

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28