HL_6GC0_025

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

6GC0|1|A|U|887, 6GC0|1|A|C|890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC0_025 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.3895

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6GC0|1|A|C|885
6GC0|1|A|A|886
6GC0|1|A|U|887
6GC0|1|A|C|888
6GC0|1|A|C|889
6GC0|1|A|C|890
6GC0|1|A|G|891

Current chains

Chain A

23S ribosomal RNA

Nearby chains