HL_6GC0_028

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGCUUAGAAGCAGCC

Length

15 nucleotides

Bulged bases

6GC0|1|A|A|1070, 6GC0|1|A|G|1071, 6GC0|1|A|C|1072, 6GC0|1|A|A|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC0_028 not in the Motif Atlas

Geometric match to HL_8C3A_221

Geometric discrepancy: 0.3945

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

6GC0|1|A|G|1062
6GC0|1|A|G|1063
6GC0|1|A|C|1064
6GC0|1|A|U|1065
6GC0|1|A|U|1066
6GC0|1|A|A|1067
6GC0|1|A|G|1068
6GC0|1|A|A|1069
6GC0|1|A|A|1070
6GC0|1|A|G|1071
6GC0|1|A|C|1072
6GC0|1|A|A|1073
6GC0|1|A|G|1074
6GC0|1|A|C|1075
6GC0|1|A|C|1076

Current chains

Chain A

23S ribosomal RNA

Nearby chains