HL_6GC0_053

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6GC0|1|A|A|2268, 6GC0|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC0_053 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.1171

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6GC0|1|A|C|2264
6GC0|1|A|U|2265
6GC0|1|A|A|2266
6GC0|1|A|A|2267
6GC0|1|A|A|2268
6GC0|1|A|G|2269
6GC0|1|A|A|2270
6GC0|1|A|G|2271
6GC0|1|A|U|2272
6GC0|1|A|A|2273
6GC0|1|A|A|2274
6GC0|1|A|C|2275
6GC0|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L27