HL_6GC0_062

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

6GC0|1|A|U|2797, 6GC0|1|A|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC0_062 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.2209

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6GC0|1|A|C|2795
6GC0|1|A|U|2796
6GC0|1|A|U|2797
6GC0|1|A|U|2798
6GC0|1|A|A|2799
6GC0|1|A|A|2800
6GC0|1|A|G|2801

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13