HL_6GC0_071

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

6GC0|1|A|U|958, 6GC0|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC0_071 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2561

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6GC0|1|A|U|955
6GC0|1|A|G|956
6GC0|1|A|C|957
6GC0|1|A|U|958
6GC0|1|A|A|959
6GC0|1|A|A|960
6GC0|1|A|C|961
6GC0|1|A|G|962

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA