HL_6GC0_076

3D structure

PDB id

6GC0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUGGGGCGGU

Length

11 nucleotides

Bulged bases

6GC0|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC0_076 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3835

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

6GC0|1|A|A|2247
6GC0|1|A|C|2248
6GC0|1|A|U|2249
6GC0|1|A|G|2250
6GC0|1|A|G|2251
6GC0|1|A|G|2252
6GC0|1|A|G|2253
6GC0|1|A|C|2254
6GC0|1|A|G|2255
6GC0|1|A|G|2256
6GC0|1|A|U|2257

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L27