HL_6GC4_046

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6GC4|1|A|A|1913, 6GC4|1|A|C|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC4_046 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.5862

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6GC4|1|A|G|1910
6GC4|1|A|U|1911
6GC4|1|A|A|1912
6GC4|1|A|A|1913
6GC4|1|A|C|1914
6GC4|1|A|U|1915
6GC4|1|A|A|1916
6GC4|1|A|U|1917
6GC4|1|A|A|1918
6GC4|1|A|A|1919
6GC4|1|A|C|1920

Current chains

Chain A

23S ribosomal RNA

Nearby chains