HL_6GC4_051

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6GC4|1|A|A|2268, 6GC4|1|A|C|2275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC4_051 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.1838

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6GC4|1|A|C|2264
6GC4|1|A|U|2265
6GC4|1|A|A|2266
6GC4|1|A|A|2267
6GC4|1|A|A|2268
6GC4|1|A|G|2269
6GC4|1|A|A|2270
6GC4|1|A|G|2271
6GC4|1|A|U|2272
6GC4|1|A|A|2273
6GC4|1|A|A|2274
6GC4|1|A|C|2275
6GC4|1|A|G|2276

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L27