HL_6GC6_010

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

6GC6|1|A|U|321, 6GC6|1|A|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC6_010 not in the Motif Atlas

Homologous match to HL_7A0S_011

Geometric discrepancy: 0.1809

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6GC6|1|A|G|319
6GC6|1|A|A|320
6GC6|1|A|U|321
6GC6|1|A|A|322
6GC6|1|A|C|323

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4