HL_6GC6_013

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6GC6|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC6_013 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.2688

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GC6|1|A|G|410
6GC6|1|A|G|411
6GC6|1|A|A|412
6GC6|1|A|C|413
6GC6|1|A|C|414
6GC6|1|A|A|415
6GC6|1|A|U|416
6GC6|1|A|C|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains