HL_6GC6_016

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

6GC6|1|A|U|546, 6GC6|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC6_016 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.3812

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GC6|1|A|G|543
6GC6|1|A|C|544
6GC6|1|A|U|545
6GC6|1|A|U|546
6GC6|1|A|A|547
6GC6|1|A|G|548
6GC6|1|A|G|549
6GC6|1|A|C|550

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21