HL_6GC6_022

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

6GC6|1|A|U|747, 6GC6|1|A|A|751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC6_022 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.2202

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6GC6|1|A|U|744
6GC6|1|A|G|745
6GC6|1|A|U|746
6GC6|1|A|U|747
6GC6|1|A|G|748
6GC6|1|A|A|749
6GC6|1|A|A|750
6GC6|1|A|A|751
6GC6|1|A|A|752
6GC6|1|A|A|753

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L22