HL_6GC6_045

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUGGAAUG

Length

8 nucleotides

Bulged bases

6GC6|1|A|G|1968, 6GC6|1|A|U|1971

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC6_045 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.196

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

6GC6|1|A|C|1833
6GC6|1|A|U|1834
6GC6|1|A|G|1835
6GC6|1|A|G|1968
6GC6|1|A|A|1969
6GC6|1|A|A|1970
6GC6|1|A|U|1971
6GC6|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2