HL_6GC7_006

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6GC7|1|A|A|196, 6GC7|1|A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC7_006 not in the Motif Atlas

Geometric match to HL_5TBW_001

Geometric discrepancy: 0.1799

The information below is about HL_5TBW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GC7|1|A|G|194
6GC7|1|A|A|195
6GC7|1|A|A|196
6GC7|1|A|A|197
6GC7|1|A|C|198
6GC7|1|A|A|199
6GC7|1|A|U|200
6GC7|1|A|C|201

Current chains

Chain A

23S ribosomal RNA

Nearby chains