HL_6GC7_012

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGACACGUGGUAUCC

Length

15 nucleotides

Bulged bases

6GC7|1|A|A|384, 6GC7|1|A|G|386, 6GC7|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC7_012 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.2388

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6GC7|1|A|G|380
6GC7|1|A|G|381
6GC7|1|A|A|382
6GC7|1|A|C|383
6GC7|1|A|A|384
6GC7|1|A|C|385
6GC7|1|A|G|386
6GC7|1|A|U|387
6GC7|1|A|G|388
6GC7|1|A|G|389
6GC7|1|A|U|390
6GC7|1|A|A|391
6GC7|1|A|U|392
6GC7|1|A|C|393
6GC7|1|A|C|394

Current chains

Chain A

23S ribosomal RNA

Nearby chains