HL_6GC7_020

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

6GC7|1|A|U|642, 6GC7|1|A|A|643, 6GC7|1|A|U|646

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC7_020 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.4634

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6GC7|1|A|U|641
6GC7|1|A|U|642
6GC7|1|A|A|643
6GC7|1|A|A|644
6GC7|1|A|C|645
6GC7|1|A|U|646
6GC7|1|A|G|647

Current chains

Chain A

23S ribosomal RNA

Nearby chains