HL_6GC7_049

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAGCGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC7_049 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3374

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6GC7|1|A|C|2855
6GC7|1|A|A|2856
6GC7|1|A|G|2857
6GC7|1|A|C|2858
6GC7|1|A|G|2859
6GC7|1|A|A|2860
6GC7|1|A|U|2861
6GC7|1|A|G|2862

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19