HL_6GC7_052

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUGAAAGGC

Length

9 nucleotides

Bulged bases

6GC7|1|A|A|781, 6GC7|1|A|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC7_052 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3447

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GC7|1|A|G|778
6GC7|1|A|U|779
6GC7|1|A|G|780
6GC7|1|A|A|781
6GC7|1|A|A|782
6GC7|1|A|A|783
6GC7|1|A|G|784
6GC7|1|A|G|785
6GC7|1|A|C|786

Current chains

Chain A

23S ribosomal RNA

Nearby chains