HL_6GC8_011

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6GC8|1|A|G|329, 6GC8|1|A|A|330, 6GC8|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC8_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1203

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6GC8|1|A|G|327
6GC8|1|A|U|328
6GC8|1|A|G|329
6GC8|1|A|A|330
6GC8|1|A|C|331
6GC8|1|A|A|332
6GC8|1|A|G|333
6GC8|1|A|C|334
6GC8|1|A|C|335

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24