HL_6GC8_029

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC8_029 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.5856

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6GC8|1|A|G|1091
6GC8|1|A|C|1092
6GC8|1|A|G|1093
6GC8|1|A|U|1094
6GC8|1|A|A|1095
6GC8|1|A|A|1096
6GC8|1|A|U|1097
6GC8|1|A|A|1098
6GC8|1|A|G|1099
6GC8|1|A|C|1100

Current chains

Chain A

23S ribosomal RNA

Nearby chains