HL_6GC8_030

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACGCUUAUGCGUU

Length

14 nucleotides

Bulged bases

6GC8|1|A|U|1174, 6GC8|1|A|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC8_030 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3805

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6GC8|1|A|G|1168
6GC8|1|A|A|1169
6GC8|1|A|C|1170
6GC8|1|A|G|1171
6GC8|1|A|C|1172
6GC8|1|A|U|1173
6GC8|1|A|U|1174
6GC8|1|A|A|1175
6GC8|1|A|U|1176
6GC8|1|A|G|1177
6GC8|1|A|C|1178
6GC8|1|A|G|1179
6GC8|1|A|U|1180
6GC8|1|A|U|1181

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15