3D structure

PDB id
6GC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate - 50S rec*
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GUGAAAAGC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6GC8_032 not in the Motif Atlas
Homologous match to HL_5J7L_165
Geometric discrepancy: 0.1396
The information below is about HL_5J7L_165
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

6GC8|1|A|G|1281
6GC8|1|A|U|1282
6GC8|1|A|G|1283
6GC8|1|A|A|1284
6GC8|1|A|A|1285
6GC8|1|A|A|1286
6GC8|1|A|A|1287
6GC8|1|A|G|1288
6GC8|1|A|C|1289

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain N
50S ribosomal protein L17
Chain S
50S ribosomal protein L22

Coloring options:


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