HL_6GC8_036

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6GC8|1|A|G|1452, 6GC8|1|A|A|1453, 6GC8|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC8_036 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.1831

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6GC8|1|A|C|1451
6GC8|1|A|G|1452
6GC8|1|A|A|1453
6GC8|1|A|C|1454
6GC8|1|A|G|1455
6GC8|1|A|G|1456
6GC8|1|A|U|1457
6GC8|1|A|U|1458
6GC8|1|A|G|1459

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17