HL_6GC8_048

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6GC8|1|A|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC8_048 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.224

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GC8|1|A|G|1910
6GC8|1|A|U|1911
6GC8|1|A|A|1912
6GC8|1|A|A|1913
6GC8|1|A|C|1914
6GC8|1|A|U|1915
6GC8|1|A|A|1916
6GC8|1|A|U|1917
6GC8|1|A|A|1918
6GC8|1|A|A|1919
6GC8|1|A|C|1920

Current chains

Chain A

23S ribosomal RNA

Nearby chains