HL_6GC8_056

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

6GC8|1|A|G|2325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC8_056 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1453

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6GC8|1|A|U|2324
6GC8|1|A|G|2325
6GC8|1|A|C|2326
6GC8|1|A|A|2327
6GC8|1|A|A|2328
6GC8|1|A|U|2329
6GC8|1|A|G|2330
6GC8|1|A|G|2331

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27