HL_6GC8_066

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6GC8|1|A|G|2751, 6GC8|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC8_066 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.107

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6GC8|1|A|C|2745
6GC8|1|A|U|2746
6GC8|1|A|G|2747
6GC8|1|A|A|2748
6GC8|1|A|A|2749
6GC8|1|A|A|2750
6GC8|1|A|G|2751
6GC8|1|A|C|2752
6GC8|1|A|A|2753
6GC8|1|A|U|2754
6GC8|1|A|C|2755
6GC8|1|A|U|2756
6GC8|1|A|A|2757
6GC8|1|A|A|2758
6GC8|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13