HL_6GC8_073

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUGAAAAGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GC8_073 not in the Motif Atlas

Geometric match to HL_4TUE_218

Geometric discrepancy: 0.3851

The information below is about HL_4TUE_218

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23827.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GC8|1|A|G|1280
6GC8|1|A|G|1281
6GC8|1|A|U|1282
6GC8|1|A|G|1283
6GC8|1|A|A|1284
6GC8|1|A|A|1285
6GC8|1|A|A|1286
6GC8|1|A|A|1287
6GC8|1|A|G|1288
6GC8|1|A|C|1289
6GC8|1|A|C|1290

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22