HL_6GQ1_030
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 6GQ1|1|1|U|1348, 6GQ1|1|1|G|1349, 6GQ1|1|1|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GQ1_030 not in the Motif Atlas
- Homologous match to HL_8C3A_029
- Geometric discrepancy: 0.5343
- The information below is about HL_8C3A_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13577.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6GQ1|1|1|U|1347
6GQ1|1|1|U|1348
6GQ1|1|1|G|1349
6GQ1|1|1|A|1350
6GQ1|1|1|U|1351
6GQ1|1|1|A|1352
6GQ1|1|1|U|1353
6GQ1|1|1|G|1354
6GQ1|1|1|A|1355
6GQ1|1|1|U|1356
6GQ1|1|1|G|1357
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S ribosomal protein L6-A
- Chain Q
- 60S ribosomal protein L18-A
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